Strain Fitness in Xanthobacter sp. DMC5 around GFF692

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF691 and GFF692 are separated by 44 nucleotidesGFF692 and GFF693 are separated by 92 nucleotidesGFF693 and GFF694 are separated by 9 nucleotides GFF691 - hypothetical protein, at 740,650 to 741,681 GFF691 GFF692 - Methionine--tRNA ligase, at 741,726 to 743,279 GFF692 GFF693 - hypothetical protein, at 743,372 to 743,881 GFF693 GFF694 - Biotin transporter BioY2, at 743,891 to 744,472 GFF694 Position (kb) 741 742 743 744Strain fitness (log2 ratio) -2 -1 0 1at 743.320 kb on + strandat 743.330 kb on + strandat 743.468 kb on + strand, within GFF693at 743.616 kb on - strand, within GFF693at 743.730 kb on - strand, within GFF693at 744.249 kb on + strand, within GFF694

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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743,320 + +0.4
743,330 + +0.1
743,468 + GFF693 0.19 -0.9
743,616 - GFF693 0.48 +0.3
743,730 - GFF693 0.70 -0.3
744,249 + GFF694 0.62 -1.8

Or see this region's nucleotide sequence