Strain Fitness in Xanthobacter sp. DMC5 around GFF690

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF689 and GFF690 overlap by 4 nucleotidesGFF690 and GFF691 overlap by 4 nucleotides GFF689 - D-alanyl-D-alanine carboxypeptidase DacC, at 738,759 to 739,994 GFF689 GFF690 - Thymidylate kinase, at 739,991 to 740,653 GFF690 GFF691 - hypothetical protein, at 740,650 to 741,681 GFF691 Position (kb) 739 740 741Strain fitness (log2 ratio) -1 0 1at 739.365 kb on + strand, within GFF689at 739.365 kb on + strand, within GFF689at 739.374 kb on + strand, within GFF689at 739.374 kb on + strand, within GFF689at 739.374 kb on + strand, within GFF689at 739.377 kb on + strand, within GFF689at 739.500 kb on + strand, within GFF689at 739.500 kb on + strand, within GFF689at 739.872 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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739,365 + GFF689 0.49 -0.1
739,365 + GFF689 0.49 -0.6
739,374 + GFF689 0.50 +1.0
739,374 + GFF689 0.50 -1.4
739,374 + GFF689 0.50 +0.8
739,377 + GFF689 0.50 -0.8
739,500 + GFF689 0.60 -0.1
739,500 + GFF689 0.60 +0.4
739,872 + -0.3

Or see this region's nucleotide sequence