Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF688 and GFF689 are separated by 167 nucleotides GFF689 and GFF690 overlap by 4 nucleotides GFF690 and GFF691 overlap by 4 nucleotides
GFF688 - Endolytic peptidoglycan transglycosylase RlpA, at 737,731 to 738,591
GFF688
GFF689 - D-alanyl-D-alanine carboxypeptidase DacC, at 738,759 to 739,994
GFF689
GFF690 - Thymidylate kinase, at 739,991 to 740,653
GFF690
GFF691 - hypothetical protein, at 740,650 to 741,681
GFF691
Position (kb) 738
739
740 Strain fitness (log2 ratio) -1
0
1
2 at 737.930 kb on - strand, within GFF688 at 737.948 kb on - strand, within GFF688 at 737.968 kb on + strand, within GFF688 at 737.968 kb on + strand, within GFF688 at 737.968 kb on + strand, within GFF688 at 737.968 kb on + strand, within GFF688 at 737.969 kb on - strand, within GFF688 at 737.969 kb on - strand, within GFF688 at 737.969 kb on - strand, within GFF688 at 737.992 kb on + strand, within GFF688 at 738.115 kb on + strand, within GFF688 at 738.116 kb on - strand, within GFF688 at 738.116 kb on - strand, within GFF688 at 738.116 kb on - strand, within GFF688 at 738.182 kb on - strand, within GFF688 at 738.182 kb on - strand, within GFF688 at 738.211 kb on + strand, within GFF688 at 738.271 kb on + strand, within GFF688 at 738.272 kb on - strand, within GFF688 at 738.478 kb on + strand, within GFF688 at 738.576 kb on - strand at 738.589 kb on + strand at 738.621 kb on + strand at 738.621 kb on + strand at 739.365 kb on + strand, within GFF689 at 739.365 kb on + strand, within GFF689 at 739.374 kb on + strand, within GFF689 at 739.374 kb on + strand, within GFF689 at 739.374 kb on + strand, within GFF689 at 739.377 kb on + strand, within GFF689 at 739.500 kb on + strand, within GFF689 at 739.500 kb on + strand, within GFF689 at 739.872 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 737,930 - GFF688 0.23 +1.6 737,948 - GFF688 0.25 -0.9 737,968 + GFF688 0.28 +0.7 737,968 + GFF688 0.28 -0.4 737,968 + GFF688 0.28 +1.8 737,968 + GFF688 0.28 +0.1 737,969 - GFF688 0.28 +1.9 737,969 - GFF688 0.28 +1.3 737,969 - GFF688 0.28 +2.0 737,992 + GFF688 0.30 -0.5 738,115 + GFF688 0.45 +1.6 738,116 - GFF688 0.45 +2.3 738,116 - GFF688 0.45 +1.2 738,116 - GFF688 0.45 +1.1 738,182 - GFF688 0.52 +0.3 738,182 - GFF688 0.52 +2.6 738,211 + GFF688 0.56 +0.6 738,271 + GFF688 0.63 +0.8 738,272 - GFF688 0.63 +1.6 738,478 + GFF688 0.87 +0.8 738,576 - +0.1 738,589 + +1.4 738,621 + +0.3 738,621 + -0.4 739,365 + GFF689 0.49 -0.1 739,365 + GFF689 0.49 -0.6 739,374 + GFF689 0.50 +1.0 739,374 + GFF689 0.50 -1.4 739,374 + GFF689 0.50 +0.8 739,377 + GFF689 0.50 -0.8 739,500 + GFF689 0.60 -0.1 739,500 + GFF689 0.60 +0.4 739,872 + -0.3
Or see this region's nucleotide sequence