Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF679 and GFF680 overlap by 4 nucleotides GFF680 and GFF681 are separated by 176 nucleotides GFF681 and GFF682 are separated by 348 nucleotides GFF682 and GFF683 are separated by 339 nucleotides
GFF679 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 728,903 to 729,532
GFF679
GFF680 - Putative L-lactate dehydrogenase operon regulatory protein, at 729,529 to 730,311
GFF680
GFF681 - L-lactate permease, at 730,488 to 732,194
GFF681
GFF682 - hypothetical protein, at 732,543 to 732,668
GFF682
GFF683 - hypothetical protein, at 733,008 to 733,616
GFF683
Position (kb) 730
731
732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 729.710 kb on + strand, within GFF680 at 729.711 kb on - strand, within GFF680 at 729.711 kb on - strand, within GFF680 at 729.727 kb on - strand, within GFF680 at 729.727 kb on - strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 730.381 kb on + strand at 730.381 kb on + strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.407 kb on - strand at 730.514 kb on - strand at 730.527 kb on - strand at 730.873 kb on + strand, within GFF681 at 730.873 kb on + strand, within GFF681 at 730.874 kb on - strand, within GFF681 at 730.915 kb on + strand, within GFF681 at 730.915 kb on + strand, within GFF681 at 730.915 kb on + strand, within GFF681 at 730.916 kb on - strand, within GFF681 at 730.916 kb on - strand, within GFF681 at 730.951 kb on - strand, within GFF681 at 731.054 kb on - strand, within GFF681 at 731.130 kb on + strand, within GFF681 at 731.264 kb on - strand, within GFF681 at 731.264 kb on - strand, within GFF681 at 731.442 kb on - strand, within GFF681 at 731.448 kb on + strand, within GFF681 at 731.448 kb on + strand, within GFF681 at 731.449 kb on - strand, within GFF681 at 731.449 kb on - strand, within GFF681 at 731.731 kb on + strand, within GFF681 at 731.924 kb on - strand, within GFF681 at 732.023 kb on - strand, within GFF681 at 732.076 kb on + strand at 732.077 kb on - strand at 732.173 kb on - strand at 732.498 kb on + strand at 732.575 kb on + strand, within GFF682 at 732.576 kb on - strand, within GFF682 at 732.576 kb on - strand, within GFF682 at 732.691 kb on + strand at 732.893 kb on + strand at 732.984 kb on + strand at 732.984 kb on + strand at 732.984 kb on + strand at 732.984 kb on + strand at 733.005 kb on - strand at 733.026 kb on + strand at 733.026 kb on + strand at 733.027 kb on - strand at 733.027 kb on - strand at 733.028 kb on + strand at 733.028 kb on + strand at 733.029 kb on - strand at 733.110 kb on + strand, within GFF683 at 733.111 kb on - strand, within GFF683 at 733.176 kb on + strand, within GFF683
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 729,710 + GFF680 0.23 -0.9 729,711 - GFF680 0.23 -0.9 729,711 - GFF680 0.23 -0.9 729,727 - GFF680 0.25 +1.3 729,727 - GFF680 0.25 -0.5 729,728 + GFF680 0.25 +0.4 729,728 + GFF680 0.25 -0.8 729,728 + GFF680 0.25 +0.4 729,728 + GFF680 0.25 +0.0 729,728 + GFF680 0.25 +2.0 729,729 - GFF680 0.26 -1.2 729,729 - GFF680 0.26 +0.4 729,729 - GFF680 0.26 +2.0 729,729 - GFF680 0.26 +0.2 729,729 - GFF680 0.26 +1.3 730,381 + -1.6 730,381 + +0.9 730,382 - -0.6 730,382 - -1.6 730,382 - -1.0 730,407 - +0.7 730,514 - -0.2 730,527 - +0.3 730,873 + GFF681 0.23 -1.6 730,873 + GFF681 0.23 -0.2 730,874 - GFF681 0.23 -0.5 730,915 + GFF681 0.25 -1.0 730,915 + GFF681 0.25 -0.9 730,915 + GFF681 0.25 +0.3 730,916 - GFF681 0.25 -0.9 730,916 - GFF681 0.25 -1.4 730,951 - GFF681 0.27 +1.0 731,054 - GFF681 0.33 +0.2 731,130 + GFF681 0.38 -1.2 731,264 - GFF681 0.45 -0.5 731,264 - GFF681 0.45 +0.3 731,442 - GFF681 0.56 -0.8 731,448 + GFF681 0.56 -1.1 731,448 + GFF681 0.56 +0.0 731,449 - GFF681 0.56 +1.3 731,449 - GFF681 0.56 -0.3 731,731 + GFF681 0.73 -0.7 731,924 - GFF681 0.84 -0.7 732,023 - GFF681 0.90 -1.4 732,076 + -0.0 732,077 - -1.2 732,173 - +1.3 732,498 + -1.4 732,575 + GFF682 0.25 -2.0 732,576 - GFF682 0.26 -0.2 732,576 - GFF682 0.26 -1.3 732,691 + +0.3 732,893 + -1.2 732,984 + -0.6 732,984 + -0.6 732,984 + -0.2 732,984 + -1.0 733,005 - -1.4 733,026 + +0.6 733,026 + -0.3 733,027 - +0.9 733,027 - -1.7 733,028 + -1.7 733,028 + +0.5 733,029 - +0.6 733,110 + GFF683 0.17 -1.0 733,111 - GFF683 0.17 +0.2 733,176 + GFF683 0.28 -1.7
Or see this region's nucleotide sequence