Strain Fitness in Xanthobacter sp. DMC5 around GFF68

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF67 and GFF68 are separated by 175 nucleotidesGFF68 and GFF69 are separated by 151 nucleotides GFF67 - DNA mismatch repair protein MutL, at 76,277 to 78,124 GFF67 GFF68 - Inositol-1-monophosphatase, at 78,300 to 79,088 GFF68 GFF69 - Tol-Pal system protein TolB, at 79,240 to 80,646 GFF69 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1at 77.585 kb on + strand, within GFF67at 77.585 kb on + strand, within GFF67at 77.585 kb on + strand, within GFF67at 77.585 kb on + strand, within GFF67at 77.586 kb on - strand, within GFF67at 77.586 kb on - strand, within GFF67at 77.586 kb on - strand, within GFF67at 77.586 kb on - strand, within GFF67at 77.588 kb on - strand, within GFF67at 79.177 kb on - strandat 79.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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77,585 + GFF67 0.71 -0.6
77,585 + GFF67 0.71 +0.9
77,585 + GFF67 0.71 +0.2
77,585 + GFF67 0.71 +0.1
77,586 - GFF67 0.71 -0.6
77,586 - GFF67 0.71 -2.1
77,586 - GFF67 0.71 -1.4
77,586 - GFF67 0.71 -0.6
77,588 - GFF67 0.71 -0.5
79,177 - -1.3
79,235 + +0.7

Or see this region's nucleotide sequence