Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF664 and GFF665 are separated by 3 nucleotides GFF665 and GFF666 are separated by 312 nucleotides GFF666 and GFF667 are separated by 169 nucleotides
GFF664 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 715,100 to 715,804
GFF664
GFF665 - hypothetical protein, at 715,808 to 716,347
GFF665
GFF666 - Alkyl hydroperoxide reductase C, at 716,660 to 717,223
GFF666
GFF667 - Alkyl hydroperoxide reductase subunit F, at 717,393 to 718,982
GFF667
Position (kb) 716
717
718 Strain fitness (log2 ratio) -1
0
1 at 715.713 kb on - strand, within GFF664 at 715.790 kb on + strand at 715.791 kb on - strand at 715.791 kb on - strand at 715.936 kb on + strand, within GFF665 at 715.936 kb on + strand, within GFF665 at 715.937 kb on - strand, within GFF665 at 715.937 kb on - strand, within GFF665 at 715.943 kb on + strand, within GFF665 at 715.943 kb on + strand, within GFF665 at 715.944 kb on - strand, within GFF665 at 716.345 kb on + strand at 716.524 kb on + strand at 716.525 kb on - strand at 716.832 kb on - strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.896 kb on + strand, within GFF666 at 716.939 kb on + strand, within GFF666 at 716.939 kb on + strand, within GFF666 at 716.939 kb on + strand, within GFF666 at 716.939 kb on + strand, within GFF666 at 716.940 kb on - strand, within GFF666 at 716.940 kb on - strand, within GFF666 at 716.940 kb on - strand, within GFF666 at 716.940 kb on - strand, within GFF666 at 717.128 kb on + strand, within GFF666 at 717.128 kb on + strand, within GFF666 at 717.231 kb on - strand at 717.429 kb on + strand at 717.430 kb on - strand at 717.762 kb on + strand, within GFF667 at 717.915 kb on + strand, within GFF667 at 717.916 kb on - strand, within GFF667 at 717.916 kb on - strand, within GFF667 at 718.081 kb on - strand, within GFF667 at 718.180 kb on - strand, within GFF667
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 715,713 - GFF664 0.87 -0.7 715,790 + +0.5 715,791 - -1.5 715,791 - +0.4 715,936 + GFF665 0.24 -1.2 715,936 + GFF665 0.24 -1.5 715,937 - GFF665 0.24 -0.5 715,937 - GFF665 0.24 +0.6 715,943 + GFF665 0.25 -0.3 715,943 + GFF665 0.25 +0.2 715,944 - GFF665 0.25 +0.4 716,345 + +0.1 716,524 + -0.0 716,525 - -0.4 716,832 - GFF666 0.30 -0.3 716,864 + GFF666 0.36 +0.0 716,864 + GFF666 0.36 +0.0 716,864 + GFF666 0.36 +0.3 716,864 + GFF666 0.36 +0.3 716,864 + GFF666 0.36 -0.6 716,896 + GFF666 0.42 +1.6 716,939 + GFF666 0.49 +0.2 716,939 + GFF666 0.49 -0.9 716,939 + GFF666 0.49 -0.7 716,939 + GFF666 0.49 +0.8 716,940 - GFF666 0.50 -0.4 716,940 - GFF666 0.50 +0.0 716,940 - GFF666 0.50 +0.6 716,940 - GFF666 0.50 -0.2 717,128 + GFF666 0.83 +0.4 717,128 + GFF666 0.83 -1.2 717,231 - +1.2 717,429 + -0.8 717,430 - -0.2 717,762 + GFF667 0.23 -0.6 717,915 + GFF667 0.33 -1.0 717,916 - GFF667 0.33 -1.5 717,916 - GFF667 0.33 -1.0 718,081 - GFF667 0.43 -0.9 718,180 - GFF667 0.49 +0.3
Or see this region's nucleotide sequence