Strain Fitness in Xanthobacter sp. DMC5 around GFF650

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF649 and GFF650 are separated by 150 nucleotidesGFF650 and GFF651 are separated by 208 nucleotides GFF649 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 696,638 to 697,504 GFF649 GFF650 - Glutamate--cysteine ligase EgtA, at 697,655 to 699,064 GFF650 GFF651 - hypothetical protein, at 699,273 to 700,199 GFF651 Position (kb) 697 698 699 700Strain fitness (log2 ratio) -1 0 1at 697.658 kb on + strandat 697.658 kb on + strandat 699.244 kb on - strandat 699.330 kb on + strandat 699.555 kb on + strand, within GFF651at 699.555 kb on + strand, within GFF651at 699.558 kb on + strand, within GFF651at 699.841 kb on - strand, within GFF651at 699.876 kb on + strand, within GFF651at 699.949 kb on - strand, within GFF651at 699.949 kb on - strand, within GFF651at 699.949 kb on - strand, within GFF651at 700.005 kb on + strand, within GFF651at 700.006 kb on - strand, within GFF651at 700.006 kb on - strand, within GFF651

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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697,658 + +0.6
697,658 + -0.0
699,244 - -0.4
699,330 + -0.6
699,555 + GFF651 0.30 +0.4
699,555 + GFF651 0.30 +0.3
699,558 + GFF651 0.31 -0.2
699,841 - GFF651 0.61 +0.7
699,876 + GFF651 0.65 +0.1
699,949 - GFF651 0.73 +0.3
699,949 - GFF651 0.73 +0.3
699,949 - GFF651 0.73 +0.3
700,005 + GFF651 0.79 +1.6
700,006 - GFF651 0.79 -0.0
700,006 - GFF651 0.79 -0.1

Or see this region's nucleotide sequence