Strain Fitness in Xanthobacter sp. DMC5 around GFF649

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF647 and GFF648 are separated by 132 nucleotidesGFF648 and GFF649 are separated by 212 nucleotidesGFF649 and GFF650 are separated by 150 nucleotides GFF647 - hypothetical protein, at 695,103 to 695,975 GFF647 GFF648 - Guanidinium exporter, at 696,108 to 696,425 GFF648 GFF649 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 696,638 to 697,504 GFF649 GFF650 - Glutamate--cysteine ligase EgtA, at 697,655 to 699,064 GFF650 Position (kb) 696 697 698Strain fitness (log2 ratio) -1 0 1at 695.721 kb on + strand, within GFF647at 695.721 kb on + strand, within GFF647at 695.722 kb on - strand, within GFF647at 696.120 kb on + strandat 696.120 kb on + strandat 696.121 kb on - strandat 697.658 kb on + strandat 697.658 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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695,721 + GFF647 0.71 +0.8
695,721 + GFF647 0.71 +0.8
695,722 - GFF647 0.71 -1.2
696,120 + -0.2
696,120 + -0.2
696,121 - +0.6
697,658 + +0.6
697,658 + -0.0

Or see this region's nucleotide sequence