Strain Fitness in Xanthobacter sp. DMC5 around GFF646

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF644 and GFF645 are separated by 321 nucleotidesGFF645 and GFF646 are separated by 117 nucleotidesGFF646 and GFF647 are separated by 224 nucleotides GFF644 - Adenine permease AdeP, at 691,081 to 692,379 GFF644 GFF645 - hypothetical protein, at 692,701 to 693,132 GFF645 GFF646 - CTP synthase, at 693,250 to 694,878 GFF646 GFF647 - hypothetical protein, at 695,103 to 695,975 GFF647 Position (kb) 693 694 695Strain fitness (log2 ratio) -1 0 1at 692.282 kb on - strandat 692.282 kb on - strandat 692.441 kb on + strandat 692.447 kb on - strandat 692.447 kb on - strandat 692.447 kb on - strandat 692.565 kb on + strandat 692.573 kb on - strandat 694.958 kb on + strandat 694.958 kb on + strandat 694.959 kb on - strandat 695.721 kb on + strand, within GFF647at 695.721 kb on + strand, within GFF647at 695.722 kb on - strand, within GFF647

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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692,282 - -0.5
692,282 - +0.9
692,441 + +0.9
692,447 - -0.1
692,447 - -0.3
692,447 - +1.0
692,565 + +0.4
692,573 - -0.4
694,958 + +0.6
694,958 + -0.2
694,959 - -0.3
695,721 + GFF647 0.71 +0.8
695,721 + GFF647 0.71 +0.8
695,722 - GFF647 0.71 -1.2

Or see this region's nucleotide sequence