Strain Fitness in Xanthobacter sp. DMC5 around GFF645

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF644 and GFF645 are separated by 321 nucleotidesGFF645 and GFF646 are separated by 117 nucleotides GFF644 - Adenine permease AdeP, at 691,081 to 692,379 GFF644 GFF645 - hypothetical protein, at 692,701 to 693,132 GFF645 GFF646 - CTP synthase, at 693,250 to 694,878 GFF646 Position (kb) 692 693 694Strain fitness (log2 ratio) -2 -1 0 1at 691.806 kb on + strand, within GFF644at 691.807 kb on - strand, within GFF644at 691.807 kb on - strand, within GFF644at 691.807 kb on - strand, within GFF644at 691.855 kb on - strand, within GFF644at 691.855 kb on - strand, within GFF644at 691.855 kb on - strand, within GFF644at 691.996 kb on + strand, within GFF644at 691.997 kb on - strand, within GFF644at 692.282 kb on - strandat 692.282 kb on - strandat 692.441 kb on + strandat 692.447 kb on - strandat 692.447 kb on - strandat 692.447 kb on - strandat 692.565 kb on + strandat 692.573 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
691,806 + GFF644 0.56 -0.6
691,807 - GFF644 0.56 +0.5
691,807 - GFF644 0.56 -0.9
691,807 - GFF644 0.56 -1.9
691,855 - GFF644 0.60 +0.4
691,855 - GFF644 0.60 -0.7
691,855 - GFF644 0.60 -0.5
691,996 + GFF644 0.70 +0.9
691,997 - GFF644 0.71 +0.1
692,282 - -0.5
692,282 - +0.9
692,441 + +0.9
692,447 - -0.1
692,447 - -0.3
692,447 - +1.0
692,565 + +0.4
692,573 - -0.4

Or see this region's nucleotide sequence