Strain Fitness in Xanthobacter sp. DMC5 around GFF64

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF63 and GFF64 are separated by 171 nucleotidesGFF64 and GFF65 are separated by 18 nucleotidesGFF65 and GFF66 are separated by 9 nucleotides GFF63 - Cytochrome b/c1, at 72,965 to 73,810 GFF63 GFF64 - Adenine phosphoribosyltransferase, at 73,982 to 74,518 GFF64 GFF65 - hypothetical protein, at 74,537 to 75,241 GFF65 GFF66 - Methionine aminopeptidase, at 75,251 to 76,078 GFF66 Position (kb) 73 74 75Strain fitness (log2 ratio) -1 0 1 2at 73.955 kb on - strandat 74.028 kb on - strandat 74.754 kb on + strand, within GFF65at 74.856 kb on + strand, within GFF65at 74.857 kb on - strand, within GFF65at 74.877 kb on + strand, within GFF65at 74.877 kb on + strand, within GFF65at 74.921 kb on + strand, within GFF65at 75.264 kb on + strandat 75.264 kb on + strandat 75.264 kb on + strandat 75.264 kb on + strandat 75.264 kb on + strandat 75.264 kb on + strandat 75.265 kb on - strandat 75.279 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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73,955 - +0.1
74,028 - -0.8
74,754 + GFF65 0.31 -0.6
74,856 + GFF65 0.45 -0.0
74,857 - GFF65 0.45 +0.6
74,877 + GFF65 0.48 -0.3
74,877 + GFF65 0.48 +2.1
74,921 + GFF65 0.54 +0.3
75,264 + -0.6
75,264 + +0.3
75,264 + +0.1
75,264 + -0.1
75,264 + -0.1
75,264 + +1.4
75,265 - -0.6
75,279 + +0.3

Or see this region's nucleotide sequence