Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF637 and GFF638 overlap by 4 nucleotides GFF638 and GFF639 are separated by 2 nucleotides GFF639 and GFF640 are separated by 36 nucleotides
GFF637 - Vitamin B12-binding protein, at 680,872 to 681,834
GFF637
GFF638 - Hemin transport system permease protein HmuU, at 681,831 to 682,916
GFF638
GFF639 - Hemin import ATP-binding protein HmuV, at 682,919 to 683,695
GFF639
GFF640 - Putative peroxiredoxin bcp, at 683,732 to 684,205
GFF640
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1 at 681.145 kb on + strand, within GFF637 at 681.146 kb on - strand, within GFF637 at 681.712 kb on + strand, within GFF637 at 681.713 kb on - strand, within GFF637 at 681.713 kb on - strand, within GFF637 at 682.237 kb on + strand, within GFF638 at 682.626 kb on - strand, within GFF638 at 682.922 kb on + strand at 682.922 kb on + strand at 682.923 kb on - strand at 683.693 kb on + strand at 683.856 kb on + strand, within GFF640 at 683.856 kb on + strand, within GFF640 at 683.857 kb on - strand, within GFF640 at 683.857 kb on - strand, within GFF640 at 683.857 kb on - strand, within GFF640 at 683.868 kb on + strand, within GFF640 at 683.895 kb on + strand, within GFF640
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 681,145 + GFF637 0.28 -0.6 681,146 - GFF637 0.28 -0.6 681,712 + GFF637 0.87 -1.6 681,713 - GFF637 0.87 -0.0 681,713 - GFF637 0.87 +0.7 682,237 + GFF638 0.37 -1.4 682,626 - GFF638 0.73 +0.1 682,922 + +0.7 682,922 + +1.1 682,923 - +0.4 683,693 + -0.1 683,856 + GFF640 0.26 -0.0 683,856 + GFF640 0.26 +0.1 683,857 - GFF640 0.26 +0.2 683,857 - GFF640 0.26 +0.8 683,857 - GFF640 0.26 +0.6 683,868 + GFF640 0.29 -0.1 683,895 + GFF640 0.34 +0.7
Or see this region's nucleotide sequence