Strain Fitness in Xanthobacter sp. DMC5 around GFF632

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF630 and GFF631 are separated by 131 nucleotidesGFF631 and GFF632 are separated by 100 nucleotidesGFF632 and GFF633 are separated by 155 nucleotides GFF630 - ATP-dependent DNA helicase RecG, at 670,581 to 672,674 GFF630 GFF631 - Protein-L-isoaspartate O-methyltransferase, at 672,806 to 673,477 GFF631 GFF632 - hypothetical protein, at 673,578 to 674,852 GFF632 GFF633 - hypothetical protein, at 675,008 to 676,246 GFF633 Position (kb) 673 674 675Strain fitness (log2 ratio) -2 -1 0 1at 672.596 kb on - strandat 672.782 kb on - strandat 673.220 kb on + strand, within GFF631at 673.996 kb on - strand, within GFF632at 674.115 kb on + strand, within GFF632at 674.115 kb on + strand, within GFF632at 674.295 kb on + strand, within GFF632at 674.296 kb on - strand, within GFF632at 674.296 kb on - strand, within GFF632at 674.763 kb on + strandat 674.861 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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672,596 - -0.3
672,782 - -1.8
673,220 + GFF631 0.62 +1.3
673,996 - GFF632 0.33 -0.0
674,115 + GFF632 0.42 -0.9
674,115 + GFF632 0.42 -0.2
674,295 + GFF632 0.56 +1.1
674,296 - GFF632 0.56 -0.9
674,296 - GFF632 0.56 -0.9
674,763 + -1.5
674,861 + -1.4

Or see this region's nucleotide sequence