Strain Fitness in Xanthobacter sp. DMC5 around GFF627

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF626 and GFF627 are separated by 149 nucleotidesGFF627 and GFF628 are separated by 117 nucleotides GFF626 - Bifunctional protein GlmU, at 665,477 to 666,829 GFF626 GFF627 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing], at 666,979 to 668,802 GFF627 GFF628 - hypothetical protein, at 668,920 to 670,098 GFF628 Position (kb) 666 667 668 669Strain fitness (log2 ratio) -1 0 1at 666.887 kb on + strandat 668.800 kb on + strandat 668.800 kb on + strandat 668.801 kb on - strandat 668.885 kb on + strandat 669.015 kb on + strandat 669.015 kb on + strandat 669.045 kb on - strand, within GFF628at 669.088 kb on + strand, within GFF628at 669.089 kb on - strand, within GFF628at 669.089 kb on - strand, within GFF628at 669.124 kb on + strand, within GFF628at 669.124 kb on + strand, within GFF628at 669.124 kb on + strand, within GFF628at 669.124 kb on + strand, within GFF628at 669.125 kb on - strand, within GFF628at 669.125 kb on - strand, within GFF628at 669.125 kb on - strand, within GFF628at 669.125 kb on - strand, within GFF628at 669.125 kb on - strand, within GFF628at 669.290 kb on - strand, within GFF628at 669.463 kb on + strand, within GFF628at 669.463 kb on + strand, within GFF628at 669.464 kb on - strand, within GFF628

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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666,887 + +0.4
668,800 + +0.0
668,800 + -0.8
668,801 - -0.9
668,885 + -0.4
669,015 + -1.1
669,015 + +0.7
669,045 - GFF628 0.11 +0.8
669,088 + GFF628 0.14 -0.8
669,089 - GFF628 0.14 +0.8
669,089 - GFF628 0.14 +0.4
669,124 + GFF628 0.17 +0.0
669,124 + GFF628 0.17 -1.1
669,124 + GFF628 0.17 +0.1
669,124 + GFF628 0.17 -0.8
669,125 - GFF628 0.17 +0.5
669,125 - GFF628 0.17 -0.7
669,125 - GFF628 0.17 -0.5
669,125 - GFF628 0.17 +0.2
669,125 - GFF628 0.17 +1.4
669,290 - GFF628 0.31 +0.7
669,463 + GFF628 0.46 +0.2
669,463 + GFF628 0.46 -1.4
669,464 - GFF628 0.46 +0.5

Or see this region's nucleotide sequence