Strain Fitness in Xanthobacter sp. DMC5 around GFF624

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF622 and GFF623 overlap by 49 nucleotidesGFF623 and GFF624 overlap by 1 nucleotidesGFF624 and GFF625 are separated by 110 nucleotidesGFF625 and GFF626 are separated by 105 nucleotides GFF622 - Signal peptidase I, at 662,069 to 662,821 GFF622 GFF623 - Ribonuclease 3, at 662,773 to 663,528 GFF623 GFF624 - GTPase Era, at 663,528 to 664,682 GFF624 GFF625 - Flavodoxin FldP, at 664,793 to 665,371 GFF625 GFF626 - Bifunctional protein GlmU, at 665,477 to 666,829 GFF626 Position (kb) 663 664 665Strain fitness (log2 ratio) -1 0 1at 664.761 kb on - strandat 664.982 kb on + strand, within GFF625at 664.982 kb on + strand, within GFF625at 664.982 kb on + strand, within GFF625at 664.983 kb on - strand, within GFF625at 665.249 kb on + strand, within GFF625

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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664,761 - -0.0
664,982 + GFF625 0.33 +0.3
664,982 + GFF625 0.33 +0.4
664,982 + GFF625 0.33 +1.0
664,983 - GFF625 0.33 +1.2
665,249 + GFF625 0.79 -1.0

Or see this region's nucleotide sequence