Strain Fitness in Xanthobacter sp. DMC5 around GFF623

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF621 and GFF622 are separated by 157 nucleotidesGFF622 and GFF623 overlap by 49 nucleotidesGFF623 and GFF624 overlap by 1 nucleotides GFF621 - Holo-[acyl-carrier-protein] synthase, at 661,504 to 661,911 GFF621 GFF622 - Signal peptidase I, at 662,069 to 662,821 GFF622 GFF623 - Ribonuclease 3, at 662,773 to 663,528 GFF623 GFF624 - GTPase Era, at 663,528 to 664,682 GFF624 Position (kb) 662 663 664Strain fitness (log2 ratio) -1 0 1at 661.960 kb on + strandat 661.961 kb on - strandat 661.961 kb on - strandat 661.962 kb on + strandat 662.004 kb on + strandat 662.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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661,960 + -1.6
661,961 - -0.6
661,961 - -0.3
661,962 + +0.4
662,004 + +1.0
662,033 + +0.1

Or see this region's nucleotide sequence