Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF618 and GFF619 are separated by 186 nucleotides GFF619 and GFF620 are separated by 26 nucleotides GFF620 and GFF621 overlap by 4 nucleotides
GFF618 - Quinone oxidoreductase 1, at 657,333 to 658,313
GFF618
GFF619 - GTP pyrophosphokinase rsh, at 658,500 to 660,710
GFF619
GFF620 - Pyridoxine 5'-phosphate synthase, at 660,737 to 661,507
GFF620
GFF621 - Holo-[acyl-carrier-protein] synthase, at 661,504 to 661,911
GFF621
Position (kb) 658
659
660
661 Strain fitness (log2 ratio) -1
0
1 at 657.571 kb on - strand, within GFF618 at 657.597 kb on + strand, within GFF618 at 657.597 kb on + strand, within GFF618 at 657.598 kb on - strand, within GFF618 at 657.598 kb on - strand, within GFF618 at 657.723 kb on + strand, within GFF618 at 657.724 kb on - strand, within GFF618 at 657.724 kb on - strand, within GFF618 at 657.724 kb on - strand, within GFF618 at 657.975 kb on + strand, within GFF618 at 657.975 kb on + strand, within GFF618 at 657.999 kb on + strand, within GFF618 at 657.999 kb on + strand, within GFF618 at 658.233 kb on + strand at 658.428 kb on + strand at 658.428 kb on + strand at 658.428 kb on + strand at 658.428 kb on + strand at 658.433 kb on - strand at 658.541 kb on + strand at 658.578 kb on + strand at 661.343 kb on + strand, within GFF620
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 657,571 - GFF618 0.24 +0.8 657,597 + GFF618 0.27 -0.3 657,597 + GFF618 0.27 -1.2 657,598 - GFF618 0.27 +0.1 657,598 - GFF618 0.27 +0.7 657,723 + GFF618 0.40 -0.8 657,724 - GFF618 0.40 +0.6 657,724 - GFF618 0.40 -0.7 657,724 - GFF618 0.40 -0.3 657,975 + GFF618 0.65 +0.6 657,975 + GFF618 0.65 -1.4 657,999 + GFF618 0.68 +0.1 657,999 + GFF618 0.68 -0.5 658,233 + +0.8 658,428 + -0.9 658,428 + +0.4 658,428 + +1.3 658,428 + -0.1 658,433 - +0.3 658,541 + +0.3 658,578 + -0.3 661,343 + GFF620 0.79 -0.1
Or see this region's nucleotide sequence