Strain Fitness in Xanthobacter sp. DMC5 around GFF61

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF60 and GFF61 are separated by 342 nucleotidesGFF61 and GFF62 are separated by 37 nucleotides GFF60 - Glucan endo-1,3-beta-glucosidase, at 69,446 to 70,657 GFF60 GFF61 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 71,000 to 71,632 GFF61 GFF62 - Cytochrome b/c1, at 71,670 to 72,944 GFF62 Position (kb) 70 71 72Strain fitness (log2 ratio) -1 0 1at 70.222 kb on + strand, within GFF60at 70.222 kb on + strand, within GFF60at 70.222 kb on + strand, within GFF60at 70.223 kb on - strand, within GFF60at 70.360 kb on - strand, within GFF60at 70.398 kb on + strand, within GFF60at 70.495 kb on - strand, within GFF60at 70.524 kb on + strand, within GFF60at 70.536 kb on + strandat 70.814 kb on + strandat 70.815 kb on - strandat 70.905 kb on + strandat 70.962 kb on + strandat 70.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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70,222 + GFF60 0.64 -0.0
70,222 + GFF60 0.64 +0.1
70,222 + GFF60 0.64 +0.7
70,223 - GFF60 0.64 -0.4
70,360 - GFF60 0.75 +0.0
70,398 + GFF60 0.79 +0.1
70,495 - GFF60 0.87 +0.1
70,524 + GFF60 0.89 -0.4
70,536 + -1.5
70,814 + +0.3
70,815 - -0.4
70,905 + -0.7
70,962 + -0.4
70,973 + -0.4

Or see this region's nucleotide sequence