Strain Fitness in Xanthobacter sp. DMC5 around GFF609

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF607 and GFF608 are separated by 111 nucleotidesGFF608 and GFF609 are separated by 406 nucleotidesGFF609 and GFF610 are separated by 382 nucleotides GFF607 - hypothetical protein, at 647,582 to 648,274 GFF607 GFF608 - hypothetical protein, at 648,386 to 648,793 GFF608 GFF609 - 50S ribosomal protein L32, at 649,200 to 649,385 GFF609 GFF610 - Foldase protein PrsA, at 649,768 to 650,709 GFF610 Position (kb) 649 650Strain fitness (log2 ratio) -1 0 1at 648.750 kb on + strand, within GFF608at 648.751 kb on - strand, within GFF608at 649.671 kb on - strandat 649.748 kb on + strandat 649.748 kb on + strandat 649.749 kb on - strandat 649.768 kb on - strandat 650.029 kb on + strand, within GFF610at 650.029 kb on + strand, within GFF610at 650.030 kb on - strand, within GFF610at 650.209 kb on + strand, within GFF610

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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648,750 + GFF608 0.89 +0.6
648,751 - GFF608 0.89 -0.9
649,671 - +0.4
649,748 + -0.3
649,748 + -0.1
649,749 - +1.3
649,768 - +0.9
650,029 + GFF610 0.28 +0.1
650,029 + GFF610 0.28 -0.4
650,030 - GFF610 0.28 -0.7
650,209 + GFF610 0.47 -0.6

Or see this region's nucleotide sequence