Strain Fitness in Xanthobacter sp. DMC5 around GFF607

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF606 and GFF607 are separated by 298 nucleotidesGFF607 and GFF608 are separated by 111 nucleotidesGFF608 and GFF609 are separated by 406 nucleotides GFF606 - Acetyl-CoA acetyltransferase, at 646,105 to 647,283 GFF606 GFF607 - hypothetical protein, at 647,582 to 648,274 GFF607 GFF608 - hypothetical protein, at 648,386 to 648,793 GFF608 GFF609 - 50S ribosomal protein L32, at 649,200 to 649,385 GFF609 Position (kb) 647 648 649Strain fitness (log2 ratio) -1 0 1at 646.631 kb on + strand, within GFF606at 646.631 kb on + strand, within GFF606at 646.631 kb on + strand, within GFF606at 646.632 kb on - strand, within GFF606at 648.750 kb on + strand, within GFF608at 648.751 kb on - strand, within GFF608

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
646,631 + GFF606 0.45 +0.4
646,631 + GFF606 0.45 +0.3
646,631 + GFF606 0.45 -1.7
646,632 - GFF606 0.45 +0.3
648,750 + GFF608 0.89 +0.6
648,751 - GFF608 0.89 -0.9

Or see this region's nucleotide sequence