Strain Fitness in Xanthobacter sp. DMC5 around GFF606

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF605 and GFF606 are separated by 203 nucleotidesGFF606 and GFF607 are separated by 298 nucleotides GFF605 - Acetoacetyl-CoA reductase, at 645,179 to 645,901 GFF605 GFF606 - Acetyl-CoA acetyltransferase, at 646,105 to 647,283 GFF606 GFF607 - hypothetical protein, at 647,582 to 648,274 GFF607 Position (kb) 646 647 648Strain fitness (log2 ratio) -1 0 1at 645.189 kb on + strandat 645.189 kb on + strandat 645.190 kb on - strandat 645.319 kb on + strand, within GFF605at 645.319 kb on + strand, within GFF605at 645.462 kb on + strand, within GFF605at 645.747 kb on + strand, within GFF605at 645.925 kb on + strandat 645.926 kb on - strandat 645.990 kb on + strandat 645.990 kb on + strandat 646.285 kb on - strand, within GFF606at 646.631 kb on + strand, within GFF606at 646.631 kb on + strand, within GFF606at 646.631 kb on + strand, within GFF606at 646.632 kb on - strand, within GFF606

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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645,189 + -0.3
645,189 + +0.1
645,190 - +0.4
645,319 + GFF605 0.19 -0.3
645,319 + GFF605 0.19 -0.2
645,462 + GFF605 0.39 -0.4
645,747 + GFF605 0.79 -0.1
645,925 + -0.0
645,926 - +0.1
645,990 + +0.4
645,990 + -0.0
646,285 - GFF606 0.15 -1.0
646,631 + GFF606 0.45 +0.4
646,631 + GFF606 0.45 +0.3
646,631 + GFF606 0.45 -1.7
646,632 - GFF606 0.45 +0.3

Or see this region's nucleotide sequence