Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF602 and GFF603 are separated by 123 nucleotides GFF603 and GFF604 are separated by 88 nucleotides GFF604 and GFF605 are separated by 75 nucleotides
GFF602 - Putative hydroxypyruvate reductase, at 642,187 to 643,467
GFF602
GFF603 - hypothetical protein, at 643,591 to 644,541
GFF603
GFF604 - hypothetical protein, at 644,630 to 645,103
GFF604
GFF605 - Acetoacetyl-CoA reductase, at 645,179 to 645,901
GFF605
Position (kb) 643
644
645 Strain fitness (log2 ratio) -1
0
1
2 at 642.893 kb on + strand, within GFF602 at 642.893 kb on + strand, within GFF602 at 642.893 kb on + strand, within GFF602 at 643.200 kb on + strand, within GFF602 at 643.201 kb on - strand, within GFF602 at 643.500 kb on + strand at 643.500 kb on + strand at 643.543 kb on + strand at 643.618 kb on + strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.620 kb on + strand at 643.620 kb on + strand at 643.621 kb on - strand at 643.621 kb on - strand at 643.621 kb on - strand at 644.599 kb on - strand at 644.599 kb on - strand at 644.751 kb on - strand, within GFF604 at 644.775 kb on - strand, within GFF604 at 644.775 kb on - strand, within GFF604 at 644.775 kb on - strand, within GFF604 at 644.775 kb on - strand, within GFF604 at 644.778 kb on - strand, within GFF604 at 644.882 kb on + strand, within GFF604 at 644.886 kb on + strand, within GFF604 at 645.026 kb on + strand, within GFF604 at 645.027 kb on - strand, within GFF604 at 645.027 kb on - strand, within GFF604 at 645.027 kb on - strand, within GFF604 at 645.189 kb on + strand at 645.189 kb on + strand at 645.190 kb on - strand at 645.319 kb on + strand, within GFF605 at 645.319 kb on + strand, within GFF605 at 645.462 kb on + strand, within GFF605
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 642,893 + GFF602 0.55 -0.3 642,893 + GFF602 0.55 -0.5 642,893 + GFF602 0.55 -0.8 643,200 + GFF602 0.79 +0.1 643,201 - GFF602 0.79 -0.4 643,500 + +1.3 643,500 + +0.5 643,543 + +0.3 643,618 + +1.6 643,619 - -0.6 643,619 - +0.7 643,620 + +1.3 643,620 + +0.2 643,621 - +0.2 643,621 - -1.1 643,621 - +0.1 644,599 - -0.6 644,599 - -1.4 644,751 - GFF604 0.26 +0.1 644,775 - GFF604 0.31 +1.9 644,775 - GFF604 0.31 +0.0 644,775 - GFF604 0.31 -0.2 644,775 - GFF604 0.31 -0.2 644,778 - GFF604 0.31 +0.4 644,882 + GFF604 0.53 +0.7 644,886 + GFF604 0.54 +0.4 645,026 + GFF604 0.84 -0.2 645,027 - GFF604 0.84 +0.9 645,027 - GFF604 0.84 -0.9 645,027 - GFF604 0.84 -0.4 645,189 + -0.3 645,189 + +0.1 645,190 - +0.4 645,319 + GFF605 0.19 -0.3 645,319 + GFF605 0.19 -0.2 645,462 + GFF605 0.39 -0.4
Or see this region's nucleotide sequence