Strain Fitness in Xanthobacter sp. DMC5 around GFF601

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF600 and GFF601 are separated by 155 nucleotidesGFF601 and GFF602 are separated by 261 nucleotides GFF600 - hypothetical protein, at 640,346 to 641,149 GFF600 GFF601 - hypothetical protein, at 641,305 to 641,925 GFF601 GFF602 - Putative hydroxypyruvate reductase, at 642,187 to 643,467 GFF602 Position (kb) 641 642Strain fitness (log2 ratio) -1 0 1at 641.371 kb on + strand, within GFF601at 641.699 kb on + strand, within GFF601at 641.838 kb on + strand, within GFF601at 642.030 kb on - strandat 642.297 kb on - strandat 642.893 kb on + strand, within GFF602at 642.893 kb on + strand, within GFF602at 642.893 kb on + strand, within GFF602

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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641,371 + GFF601 0.11 -0.0
641,699 + GFF601 0.63 +0.4
641,838 + GFF601 0.86 -0.7
642,030 - +0.7
642,297 - +0.3
642,893 + GFF602 0.55 -0.3
642,893 + GFF602 0.55 -0.5
642,893 + GFF602 0.55 -0.8

Or see this region's nucleotide sequence