Strain Fitness in Xanthobacter sp. DMC5 around GFF600

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF599 and GFF600 are separated by 322 nucleotidesGFF600 and GFF601 are separated by 155 nucleotides GFF599 - hypothetical protein, at 638,191 to 640,023 GFF599 GFF600 - hypothetical protein, at 640,346 to 641,149 GFF600 GFF601 - hypothetical protein, at 641,305 to 641,925 GFF601 Position (kb) 640 641 642Strain fitness (log2 ratio) -2 -1 0 1at 639.421 kb on - strand, within GFF599at 639.518 kb on + strand, within GFF599at 639.519 kb on - strand, within GFF599at 639.849 kb on - strandat 640.102 kb on - strandat 640.124 kb on - strandat 641.371 kb on + strand, within GFF601at 641.699 kb on + strand, within GFF601at 641.838 kb on + strand, within GFF601at 642.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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639,421 - GFF599 0.67 +0.6
639,518 + GFF599 0.72 -1.0
639,519 - GFF599 0.72 +1.1
639,849 - +0.5
640,102 - -1.9
640,124 - -0.1
641,371 + GFF601 0.11 -0.0
641,699 + GFF601 0.63 +0.4
641,838 + GFF601 0.86 -0.7
642,030 - +0.7

Or see this region's nucleotide sequence