Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF595 and GFF596 are separated by 78 nucleotides GFF596 and GFF597 overlap by 25 nucleotides GFF597 and GFF598 are separated by 446 nucleotides GFF598 and GFF599 are separated by 4 nucleotides
GFF595 - DNA polymerase IV, at 634,610 to 635,911
GFF595
GFF596 - hypothetical protein, at 635,990 to 636,430
GFF596
GFF597 - hypothetical protein, at 636,406 to 637,251
GFF597
GFF598 - hypothetical protein, at 637,698 to 638,186
GFF598
GFF599 - hypothetical protein, at 638,191 to 640,023
GFF599
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1 at 635.516 kb on + strand, within GFF595 at 636.428 kb on + strand at 636.482 kb on + strand at 636.482 kb on + strand at 636.723 kb on + strand, within GFF597 at 636.724 kb on - strand, within GFF597 at 637.363 kb on - strand at 637.440 kb on + strand at 637.455 kb on - strand at 637.545 kb on + strand at 637.589 kb on + strand at 637.908 kb on - strand, within GFF598 at 637.947 kb on + strand, within GFF598 at 637.947 kb on + strand, within GFF598 at 637.984 kb on - strand, within GFF598 at 638.234 kb on + strand at 638.235 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 635,516 + GFF595 0.70 +0.1 636,428 + -1.3 636,482 + -2.4 636,482 + -0.2 636,723 + GFF597 0.37 +0.5 636,724 - GFF597 0.38 -1.5 637,363 - +0.8 637,440 + -1.0 637,455 - +0.4 637,545 + -0.9 637,589 + -0.7 637,908 - GFF598 0.43 -1.6 637,947 + GFF598 0.51 +0.0 637,947 + GFF598 0.51 -1.5 637,984 - GFF598 0.58 -0.3 638,234 + -0.9 638,235 - +0.8
Or see this region's nucleotide sequence