Strain Fitness in Xanthobacter sp. DMC5 around GFF596

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF595 and GFF596 are separated by 78 nucleotidesGFF596 and GFF597 overlap by 25 nucleotides GFF595 - DNA polymerase IV, at 634,610 to 635,911 GFF595 GFF596 - hypothetical protein, at 635,990 to 636,430 GFF596 GFF597 - hypothetical protein, at 636,406 to 637,251 GFF597 Position (kb) 635 636 637Strain fitness (log2 ratio) -2 -1 0 1at 635.369 kb on + strand, within GFF595at 635.516 kb on + strand, within GFF595at 636.428 kb on + strandat 636.482 kb on + strandat 636.482 kb on + strandat 636.723 kb on + strand, within GFF597at 636.724 kb on - strand, within GFF597at 637.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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635,369 + GFF595 0.58 -0.1
635,516 + GFF595 0.70 +0.1
636,428 + -1.3
636,482 + -2.4
636,482 + -0.2
636,723 + GFF597 0.37 +0.5
636,724 - GFF597 0.38 -1.5
637,363 - +0.8

Or see this region's nucleotide sequence