Strain Fitness in Xanthobacter sp. DMC5 around GFF588

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF586 and GFF587 are separated by 100 nucleotidesGFF587 and GFF588 are separated by 285 nucleotidesGFF588 and GFF589 are separated by 116 nucleotides GFF586 - hypothetical protein, at 626,989 to 627,999 GFF586 GFF587 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 628,100 to 628,552 GFF587 GFF588 - Enolase, at 628,838 to 630,121 GFF588 GFF589 - L-carnitine dehydrogenase, at 630,238 to 631,275 GFF589 Position (kb) 628 629 630 631Strain fitness (log2 ratio) -1 0 1at 628.212 kb on + strand, within GFF587at 630.160 kb on + strandat 630.161 kb on - strandat 630.351 kb on + strand, within GFF589at 630.351 kb on + strand, within GFF589at 630.351 kb on + strand, within GFF589at 630.352 kb on - strand, within GFF589at 630.758 kb on + strand, within GFF589at 630.758 kb on + strand, within GFF589at 630.758 kb on + strand, within GFF589at 630.758 kb on + strand, within GFF589

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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628,212 + GFF587 0.25 +1.6
630,160 + +0.4
630,161 - -0.5
630,351 + GFF589 0.11 -0.5
630,351 + GFF589 0.11 -1.3
630,351 + GFF589 0.11 +0.7
630,352 - GFF589 0.11 +1.7
630,758 + GFF589 0.50 +0.3
630,758 + GFF589 0.50 +0.2
630,758 + GFF589 0.50 +0.7
630,758 + GFF589 0.50 +0.4

Or see this region's nucleotide sequence