Strain Fitness in Xanthobacter sp. DMC5 around GFF587

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF586 and GFF587 are separated by 100 nucleotidesGFF587 and GFF588 are separated by 285 nucleotides GFF586 - hypothetical protein, at 626,989 to 627,999 GFF586 GFF587 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 628,100 to 628,552 GFF587 GFF588 - Enolase, at 628,838 to 630,121 GFF588 Position (kb) 628 629Strain fitness (log2 ratio) -1 0 1at 627.167 kb on + strand, within GFF586at 627.467 kb on + strand, within GFF586at 627.468 kb on - strand, within GFF586at 627.468 kb on - strand, within GFF586at 627.472 kb on + strand, within GFF586at 627.633 kb on - strand, within GFF586at 627.633 kb on - strand, within GFF586at 627.686 kb on + strand, within GFF586at 627.687 kb on - strand, within GFF586at 627.687 kb on - strand, within GFF586at 627.719 kb on + strand, within GFF586at 627.719 kb on + strand, within GFF586at 627.719 kb on + strand, within GFF586at 627.720 kb on - strand, within GFF586at 627.720 kb on - strand, within GFF586at 627.720 kb on - strand, within GFF586at 627.720 kb on - strand, within GFF586at 627.720 kb on - strand, within GFF586at 627.755 kb on + strand, within GFF586at 627.756 kb on - strand, within GFF586at 628.212 kb on + strand, within GFF587

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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627,167 + GFF586 0.18 +0.7
627,467 + GFF586 0.47 -0.8
627,468 - GFF586 0.47 +1.7
627,468 - GFF586 0.47 +0.3
627,472 + GFF586 0.48 -0.8
627,633 - GFF586 0.64 -0.1
627,633 - GFF586 0.64 +0.5
627,686 + GFF586 0.69 -0.3
627,687 - GFF586 0.69 -0.3
627,687 - GFF586 0.69 -0.9
627,719 + GFF586 0.72 +0.0
627,719 + GFF586 0.72 -0.0
627,719 + GFF586 0.72 -0.8
627,720 - GFF586 0.72 -1.2
627,720 - GFF586 0.72 -0.5
627,720 - GFF586 0.72 +0.8
627,720 - GFF586 0.72 -0.3
627,720 - GFF586 0.72 +0.9
627,755 + GFF586 0.76 +0.1
627,756 - GFF586 0.76 +0.9
628,212 + GFF587 0.25 +1.6

Or see this region's nucleotide sequence