Strain Fitness in Xanthobacter sp. DMC5 around GFF581

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF579 and GFF580 are separated by 5 nucleotidesGFF580 and GFF581 are separated by 1 nucleotidesGFF581 and GFF582 are separated by 9 nucleotidesGFF582 and GFF583 are separated by 172 nucleotides GFF579 - 6,7-dimethyl-8-ribityllumazine synthase 1, at 618,897 to 619,388 GFF579 GFF580 - Transcription antitermination protein NusB, at 619,394 to 619,891 GFF580 GFF581 - Thiamine-monophosphate kinase, at 619,893 to 620,888 GFF581 GFF582 - hypothetical protein, at 620,898 to 621,335 GFF582 GFF583 - DNA polymerase III subunit alpha, at 621,508 to 624,975 GFF583 Position (kb) 619 620 621Strain fitness (log2 ratio) -1 0 1at 621.070 kb on + strand, within GFF582at 621.071 kb on - strand, within GFF582at 621.366 kb on + strandat 621.366 kb on + strandat 621.367 kb on - strandat 621.438 kb on - strandat 621.458 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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621,070 + GFF582 0.39 -0.1
621,071 - GFF582 0.39 -0.0
621,366 + +1.2
621,366 + -0.4
621,367 - -0.8
621,438 - -0.8
621,458 + +0.4

Or see this region's nucleotide sequence