Strain Fitness in Xanthobacter sp. DMC5 around GFF575

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF574 and GFF575 are separated by 283 nucleotidesGFF575 and GFF576 are separated by 28 nucleotidesGFF576 and GFF577 overlap by 4 nucleotides GFF574 - hypothetical protein, at 613,806 to 614,912 GFF574 GFF575 - Serine hydroxymethyltransferase 2, at 615,196 to 616,509 GFF575 GFF576 - Transcriptional repressor NrdR, at 616,538 to 617,083 GFF576 GFF577 - Riboflavin biosynthesis protein RibD, at 617,080 to 618,228 GFF577 Position (kb) 615 616 617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 614.200 kb on + strand, within GFF574at 614.200 kb on + strand, within GFF574at 614.358 kb on - strand, within GFF574at 614.358 kb on - strand, within GFF574at 614.368 kb on - strand, within GFF574at 614.455 kb on - strand, within GFF574at 614.694 kb on + strand, within GFF574at 614.885 kb on + strandat 614.886 kb on - strandat 614.886 kb on - strandat 614.899 kb on + strandat 614.900 kb on - strandat 614.929 kb on + strandat 615.007 kb on + strandat 615.008 kb on - strandat 616.501 kb on + strandat 616.928 kb on + strand, within GFF576

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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614,200 + GFF574 0.36 -0.3
614,200 + GFF574 0.36 -0.0
614,358 - GFF574 0.50 -0.3
614,358 - GFF574 0.50 +1.9
614,368 - GFF574 0.51 -0.1
614,455 - GFF574 0.59 +0.5
614,694 + GFF574 0.80 +0.3
614,885 + -0.2
614,886 - -1.3
614,886 - +0.6
614,899 + +0.3
614,900 - -0.3
614,929 + +0.3
615,007 + -0.0
615,008 - +0.1
616,501 + -0.2
616,928 + GFF576 0.71 -3.4

Or see this region's nucleotide sequence