Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF572 and GFF573 overlap by 4 nucleotides GFF573 and GFF574 overlap by 17 nucleotides GFF574 and GFF575 are separated by 283 nucleotides
GFF572 - Biopolymer transport protein ExbD, at 612,495 to 612,986
GFF572
GFF573 - hypothetical protein, at 612,983 to 613,822
GFF573
GFF574 - hypothetical protein, at 613,806 to 614,912
GFF574
GFF575 - Serine hydroxymethyltransferase 2, at 615,196 to 616,509
GFF575
Position (kb) 613
614
615 Strain fitness (log2 ratio) -1
0
1
2 at 613.103 kb on + strand, within GFF573 at 613.890 kb on - strand at 613.981 kb on + strand, within GFF574 at 614.139 kb on - strand, within GFF574 at 614.167 kb on + strand, within GFF574 at 614.167 kb on + strand, within GFF574 at 614.168 kb on - strand, within GFF574 at 614.168 kb on - strand, within GFF574 at 614.200 kb on + strand, within GFF574 at 614.200 kb on + strand, within GFF574 at 614.358 kb on - strand, within GFF574 at 614.358 kb on - strand, within GFF574 at 614.368 kb on - strand, within GFF574 at 614.455 kb on - strand, within GFF574 at 614.694 kb on + strand, within GFF574 at 614.885 kb on + strand at 614.886 kb on - strand at 614.886 kb on - strand at 614.899 kb on + strand at 614.900 kb on - strand at 614.929 kb on + strand at 615.007 kb on + strand at 615.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 613,103 + GFF573 0.14 +0.1 613,890 - -0.1 613,981 + GFF574 0.16 -0.3 614,139 - GFF574 0.30 -0.9 614,167 + GFF574 0.33 +2.0 614,167 + GFF574 0.33 -0.1 614,168 - GFF574 0.33 +1.3 614,168 - GFF574 0.33 -0.9 614,200 + GFF574 0.36 -0.3 614,200 + GFF574 0.36 -0.0 614,358 - GFF574 0.50 -0.3 614,358 - GFF574 0.50 +1.9 614,368 - GFF574 0.51 -0.1 614,455 - GFF574 0.59 +0.5 614,694 + GFF574 0.80 +0.3 614,885 + -0.2 614,886 - -1.3 614,886 - +0.6 614,899 + +0.3 614,900 - -0.3 614,929 + +0.3 615,007 + -0.0 615,008 - +0.1
Or see this region's nucleotide sequence