Strain Fitness in Xanthobacter sp. DMC5 around GFF571

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF570 and GFF571 are separated by 572 nucleotidesGFF571 and GFF572 are separated by 6 nucleotidesGFF572 and GFF573 overlap by 4 nucleotides GFF570 - 60 kDa chaperonin 5, at 609,508 to 611,139 GFF570 GFF571 - Biopolymer transport protein ExbB, at 611,712 to 612,488 GFF571 GFF572 - Biopolymer transport protein ExbD, at 612,495 to 612,986 GFF572 GFF573 - hypothetical protein, at 612,983 to 613,822 GFF573 Position (kb) 611 612 613Strain fitness (log2 ratio) -2 -1 0 1at 610.930 kb on + strand, within GFF570at 610.930 kb on + strand, within GFF570at 610.930 kb on + strand, within GFF570at 610.931 kb on - strand, within GFF570at 610.963 kb on + strand, within GFF570at 611.235 kb on - strandat 611.291 kb on - strandat 611.295 kb on - strandat 611.353 kb on - strandat 611.355 kb on + strandat 611.413 kb on - strandat 612.349 kb on - strand, within GFF571at 613.103 kb on + strand, within GFF573

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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610,930 + GFF570 0.87 -1.6
610,930 + GFF570 0.87 -1.2
610,930 + GFF570 0.87 -1.0
610,931 - GFF570 0.87 +0.6
610,963 + GFF570 0.89 -0.8
611,235 - -2.2
611,291 - -0.8
611,295 - -0.3
611,353 - -0.0
611,355 + -0.3
611,413 - +1.3
612,349 - GFF571 0.82 -0.5
613,103 + GFF573 0.14 +0.1

Or see this region's nucleotide sequence