Strain Fitness in Xanthobacter sp. DMC5 around GFF57

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF56 and GFF57 are separated by 3 nucleotidesGFF57 and GFF58 are separated by 74 nucleotides GFF56 - CCA-adding enzyme, at 66,397 to 67,635 GFF56 GFF57 - hypothetical protein, at 67,639 to 67,848 GFF57 GFF58 - Oxygen-dependent coproporphyrinogen-III oxidase, at 67,923 to 68,870 GFF58 Position (kb) 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 67.633 kb on + strandat 67.633 kb on + strandat 67.634 kb on - strandat 67.634 kb on - strandat 67.634 kb on - strandat 67.640 kb on + strandat 67.640 kb on + strandat 67.641 kb on - strandat 67.641 kb on - strandat 67.770 kb on - strand, within GFF57at 67.899 kb on + strandat 67.900 kb on - strandat 67.910 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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67,633 + -0.7
67,633 + +1.2
67,634 - -0.6
67,634 - -1.5
67,634 - +0.6
67,640 + +1.5
67,640 + +0.1
67,641 - +0.6
67,641 - -2.0
67,770 - GFF57 0.62 +2.2
67,899 + +0.4
67,900 - +0.3
67,910 + -0.4

Or see this region's nucleotide sequence