Strain Fitness in Xanthobacter sp. DMC5 around GFF567

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF566 and GFF567 are separated by 46 nucleotidesGFF567 and GFF568 are separated by 248 nucleotidesGFF568 and GFF569 are separated by 398 nucleotides GFF566 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 606,423 to 607,511 GFF566 GFF567 - hypothetical protein, at 607,558 to 608,160 GFF567 GFF568 - hypothetical protein, at 608,409 to 608,687 GFF568 GFF569 - 10 kDa chaperonin 1, at 609,086 to 609,400 GFF569 Position (kb) 607 608 609Strain fitness (log2 ratio) -1 0 1at 606.973 kb on + strand, within GFF566at 606.973 kb on + strand, within GFF566at 607.019 kb on - strand, within GFF566at 607.115 kb on + strand, within GFF566at 607.583 kb on + strandat 607.584 kb on - strandat 608.564 kb on - strand, within GFF568at 608.564 kb on - strand, within GFF568at 608.564 kb on - strand, within GFF568at 608.564 kb on - strand, within GFF568at 608.614 kb on + strand, within GFF568at 608.615 kb on - strand, within GFF568at 608.615 kb on - strand, within GFF568at 608.641 kb on + strand, within GFF568at 608.932 kb on + strandat 608.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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606,973 + GFF566 0.51 -0.3
606,973 + GFF566 0.51 -1.2
607,019 - GFF566 0.55 -0.8
607,115 + GFF566 0.64 +0.8
607,583 + -0.5
607,584 - -1.0
608,564 - GFF568 0.56 -0.5
608,564 - GFF568 0.56 -1.5
608,564 - GFF568 0.56 +0.2
608,564 - GFF568 0.56 +0.2
608,614 + GFF568 0.73 +0.1
608,615 - GFF568 0.74 -0.7
608,615 - GFF568 0.74 -1.0
608,641 + GFF568 0.83 -0.7
608,932 + -0.6
608,933 - +0.5

Or see this region's nucleotide sequence