Strain Fitness in Xanthobacter sp. DMC5 around GFF565

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF564 and GFF565 are separated by 172 nucleotidesGFF565 and GFF566 overlap by 4 nucleotides GFF564 - hypothetical protein, at 604,209 to 605,099 GFF564 GFF565 - Queuine tRNA-ribosyltransferase, at 605,272 to 606,426 GFF565 GFF566 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 606,423 to 607,511 GFF566 Position (kb) 605 606 607Strain fitness (log2 ratio) -1 0 1 2at 604.570 kb on - strand, within GFF564at 604.767 kb on + strand, within GFF564at 604.920 kb on + strand, within GFF564at 605.331 kb on - strandat 605.644 kb on + strand, within GFF565at 606.225 kb on - strand, within GFF565at 606.464 kb on - strandat 606.469 kb on + strandat 606.469 kb on + strandat 606.502 kb on + strandat 606.503 kb on - strandat 606.503 kb on - strandat 606.973 kb on + strand, within GFF566at 606.973 kb on + strand, within GFF566at 607.019 kb on - strand, within GFF566at 607.115 kb on + strand, within GFF566

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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604,570 - GFF564 0.41 +0.3
604,767 + GFF564 0.63 -0.9
604,920 + GFF564 0.80 +0.3
605,331 - -0.5
605,644 + GFF565 0.32 +0.7
606,225 - GFF565 0.83 +1.8
606,464 - -0.4
606,469 + +0.9
606,469 + +0.5
606,502 + +1.3
606,503 - +0.5
606,503 - +0.1
606,973 + GFF566 0.51 -0.3
606,973 + GFF566 0.51 -1.2
607,019 - GFF566 0.55 -0.8
607,115 + GFF566 0.64 +0.8

Or see this region's nucleotide sequence