Strain Fitness in Xanthobacter sp. DMC5 around GFF562

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF561 and GFF562 are separated by 13 nucleotidesGFF562 and GFF563 are separated by 10 nucleotidesGFF563 and GFF564 are separated by 3 nucleotides GFF561 - Protein translocase subunit SecD, at 601,084 to 602,691 GFF561 GFF562 - Protein-export membrane protein SecF, at 602,705 to 603,814 GFF562 GFF563 - hypothetical protein, at 603,825 to 604,205 GFF563 GFF564 - hypothetical protein, at 604,209 to 605,099 GFF564 Position (kb) 602 603 604Strain fitness (log2 ratio) -1 0 1at 603.879 kb on + strand, within GFF563at 604.149 kb on + strand, within GFF563at 604.149 kb on + strand, within GFF563at 604.149 kb on + strand, within GFF563at 604.149 kb on + strand, within GFF563at 604.251 kb on + strandat 604.570 kb on - strand, within GFF564at 604.767 kb on + strand, within GFF564

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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603,879 + GFF563 0.14 -0.8
604,149 + GFF563 0.85 -0.0
604,149 + GFF563 0.85 +0.9
604,149 + GFF563 0.85 -0.2
604,149 + GFF563 0.85 +1.0
604,251 + -0.0
604,570 - GFF564 0.41 +0.3
604,767 + GFF564 0.63 -0.9

Or see this region's nucleotide sequence