Strain Fitness in Xanthobacter sp. DMC5 around GFF561

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF559 and GFF560 are separated by 237 nucleotidesGFF560 and GFF561 are separated by 38 nucleotidesGFF561 and GFF562 are separated by 13 nucleotides GFF559 - 5'-nucleotidase SurE, at 599,693 to 600,460 GFF559 GFF560 - Sec translocon accessory complex subunit YajC, at 600,698 to 601,045 GFF560 GFF561 - Protein translocase subunit SecD, at 601,084 to 602,691 GFF561 GFF562 - Protein-export membrane protein SecF, at 602,705 to 603,814 GFF562 Position (kb) 601 602 603Strain fitness (log2 ratio) -1 0 1at 600.178 kb on - strand, within GFF559at 600.302 kb on + strand, within GFF559at 600.302 kb on + strand, within GFF559at 600.305 kb on + strand, within GFF559at 600.305 kb on + strand, within GFF559at 600.305 kb on + strand, within GFF559at 600.332 kb on + strand, within GFF559at 600.333 kb on - strand, within GFF559at 600.333 kb on - strand, within GFF559at 600.632 kb on + strandat 600.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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600,178 - GFF559 0.63 -0.2
600,302 + GFF559 0.79 -0.6
600,302 + GFF559 0.79 -0.0
600,305 + GFF559 0.80 +0.1
600,305 + GFF559 0.80 +0.4
600,305 + GFF559 0.80 -0.2
600,332 + GFF559 0.83 -0.3
600,333 - GFF559 0.83 -1.3
600,333 - GFF559 0.83 +1.3
600,632 + +0.9
600,632 + -0.2

Or see this region's nucleotide sequence