Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF558 and GFF559 are separated by 204 nucleotides GFF559 and GFF560 are separated by 237 nucleotides GFF560 and GFF561 are separated by 38 nucleotides
GFF558 - Serine--tRNA ligase, at 598,004 to 599,488
GFF558
GFF559 - 5'-nucleotidase SurE, at 599,693 to 600,460
GFF559
GFF560 - Sec translocon accessory complex subunit YajC, at 600,698 to 601,045
GFF560
GFF561 - Protein translocase subunit SecD, at 601,084 to 602,691
GFF561
Position (kb) 599
600
601 Strain fitness (log2 ratio) -1
0
1 at 599.487 kb on - strand at 599.487 kb on - strand at 599.658 kb on + strand at 600.002 kb on + strand, within GFF559 at 600.003 kb on - strand, within GFF559 at 600.003 kb on - strand, within GFF559 at 600.178 kb on - strand, within GFF559 at 600.302 kb on + strand, within GFF559 at 600.302 kb on + strand, within GFF559 at 600.305 kb on + strand, within GFF559 at 600.305 kb on + strand, within GFF559 at 600.305 kb on + strand, within GFF559 at 600.332 kb on + strand, within GFF559 at 600.333 kb on - strand, within GFF559 at 600.333 kb on - strand, within GFF559 at 600.632 kb on + strand at 600.632 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 599,487 - +1.7 599,487 - +0.3 599,658 + -0.4 600,002 + GFF559 0.40 +0.2 600,003 - GFF559 0.40 -1.5 600,003 - GFF559 0.40 -0.3 600,178 - GFF559 0.63 -0.2 600,302 + GFF559 0.79 -0.6 600,302 + GFF559 0.79 -0.0 600,305 + GFF559 0.80 +0.1 600,305 + GFF559 0.80 +0.4 600,305 + GFF559 0.80 -0.2 600,332 + GFF559 0.83 -0.3 600,333 - GFF559 0.83 -1.3 600,333 - GFF559 0.83 +1.3 600,632 + +0.9 600,632 + -0.2
Or see this region's nucleotide sequence