Strain Fitness in Xanthobacter sp. DMC5 around GFF558

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF557 and GFF558 are separated by 210 nucleotidesGFF558 and GFF559 are separated by 204 nucleotides GFF557 - Sec-independent protein translocase protein TatC, at 596,984 to 597,793 GFF557 GFF558 - Serine--tRNA ligase, at 598,004 to 599,488 GFF558 GFF559 - 5'-nucleotidase SurE, at 599,693 to 600,460 GFF559 Position (kb) 598 599 600Strain fitness (log2 ratio) -1 0 1at 599.487 kb on - strandat 599.487 kb on - strandat 599.658 kb on + strandat 600.002 kb on + strand, within GFF559at 600.003 kb on - strand, within GFF559at 600.003 kb on - strand, within GFF559at 600.178 kb on - strand, within GFF559at 600.302 kb on + strand, within GFF559at 600.302 kb on + strand, within GFF559at 600.305 kb on + strand, within GFF559at 600.305 kb on + strand, within GFF559at 600.305 kb on + strand, within GFF559at 600.332 kb on + strand, within GFF559at 600.333 kb on - strand, within GFF559at 600.333 kb on - strand, within GFF559

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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599,487 - +1.7
599,487 - +0.3
599,658 + -0.4
600,002 + GFF559 0.40 +0.2
600,003 - GFF559 0.40 -1.5
600,003 - GFF559 0.40 -0.3
600,178 - GFF559 0.63 -0.2
600,302 + GFF559 0.79 -0.6
600,302 + GFF559 0.79 -0.0
600,305 + GFF559 0.80 +0.1
600,305 + GFF559 0.80 +0.4
600,305 + GFF559 0.80 -0.2
600,332 + GFF559 0.83 -0.3
600,333 - GFF559 0.83 -1.3
600,333 - GFF559 0.83 +1.3

Or see this region's nucleotide sequence