Strain Fitness in Xanthobacter sp. DMC5 around GFF557

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF554 and GFF555 are separated by 68 nucleotidesGFF555 and GFF556 are separated by 61 nucleotidesGFF556 and GFF557 overlap by 1 nucleotidesGFF557 and GFF558 are separated by 210 nucleotides GFF554 - Vitamin B12 import ATP-binding protein BtuD, at 594,960 to 596,102 GFF554 GFF555 - Sec-independent protein translocase protein TatA, at 596,171 to 596,407 GFF555 GFF556 - Sec-independent protein translocase protein TatB, at 596,469 to 596,984 GFF556 GFF557 - Sec-independent protein translocase protein TatC, at 596,984 to 597,793 GFF557 GFF558 - Serine--tRNA ligase, at 598,004 to 599,488 GFF558 Position (kb) 596 597 598Strain fitness (log2 ratio) -1 0 1at 596.100 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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596,100 + +1.0

Or see this region's nucleotide sequence