Strain Fitness in Xanthobacter sp. DMC5 around GFF552

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF551 and GFF552 are separated by 4 nucleotidesGFF552 and GFF553 overlap by 4 nucleotidesGFF553 and GFF554 overlap by 35 nucleotides GFF551 - Beta-hexosaminidase, at 592,367 to 593,380 GFF551 GFF552 - Segregation and condensation protein A, at 593,385 to 594,254 GFF552 GFF553 - Segregation and condensation protein B, at 594,251 to 594,994 GFF553 GFF554 - Vitamin B12 import ATP-binding protein BtuD, at 594,960 to 596,102 GFF554 Position (kb) 593 594 595Strain fitness (log2 ratio) -1 0 1at 592.706 kb on + strand, within GFF551at 593.024 kb on + strand, within GFF551at 593.024 kb on + strand, within GFF551at 595.098 kb on + strand, within GFF554at 595.098 kb on + strand, within GFF554

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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592,706 + GFF551 0.33 -0.6
593,024 + GFF551 0.65 +0.6
593,024 + GFF551 0.65 -0.3
595,098 + GFF554 0.12 +0.2
595,098 + GFF554 0.12 +0.5

Or see this region's nucleotide sequence