Strain Fitness in Xanthobacter sp. DMC5 around GFF55

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF53 and GFF54 overlap by 1 nucleotidesGFF54 and GFF55 overlap by 1 nucleotidesGFF55 and GFF56 overlap by 4 nucleotides GFF53 - hypothetical protein, at 64,885 to 65,463 GFF53 GFF54 - putative Nudix hydrolase NudL, at 65,463 to 66,140 GFF54 GFF55 - hypothetical protein, at 66,140 to 66,400 GFF55 GFF56 - CCA-adding enzyme, at 66,397 to 67,635 GFF56 Position (kb) 66 67Strain fitness (log2 ratio) -1 0 1at 65.296 kb on + strand, within GFF53at 66.347 kb on + strand, within GFF55

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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65,296 + GFF53 0.71 -0.1
66,347 + GFF55 0.79 +0.4

Or see this region's nucleotide sequence