Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF540 and GFF541 overlap by 41 nucleotides GFF541 and GFF542 are separated by 242 nucleotides GFF542 and GFF543 are separated by 111 nucleotides GFF543 and GFF544 are separated by 123 nucleotides
GFF540 - hypothetical protein, at 582,097 to 583,722
GFF540
GFF541 - hypothetical protein, at 583,682 to 584,080
GFF541
GFF542 - Magnesium transporter MgtE, at 584,323 to 585,729
GFF542
GFF543 - hypothetical protein, at 585,841 to 586,095
GFF543
GFF544 - hypothetical protein, at 586,219 to 586,524
GFF544
Position (kb) 584
585
586 Strain fitness (log2 ratio) -2
-1
0
1 at 583.609 kb on + strand at 583.609 kb on + strand at 583.609 kb on + strand at 583.610 kb on - strand at 583.610 kb on - strand at 583.610 kb on - strand at 583.969 kb on - strand, within GFF541 at 583.969 kb on - strand, within GFF541 at 583.969 kb on - strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 584.065 kb on - strand at 584.116 kb on + strand at 584.116 kb on + strand at 584.117 kb on - strand at 584.194 kb on + strand at 584.194 kb on + strand at 584.675 kb on - strand, within GFF542 at 584.675 kb on - strand, within GFF542 at 584.851 kb on + strand, within GFF542 at 584.887 kb on + strand, within GFF542 at 584.887 kb on + strand, within GFF542 at 585.055 kb on + strand, within GFF542 at 585.819 kb on + strand at 585.820 kb on - strand at 585.944 kb on - strand, within GFF543 at 586.154 kb on - strand at 586.234 kb on + strand at 586.339 kb on + strand, within GFF544 at 586.340 kb on - strand, within GFF544 at 586.477 kb on + strand, within GFF544 at 586.478 kb on - strand, within GFF544 at 586.713 kb on - strand at 586.713 kb on - strand at 586.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 583,609 + -1.2 583,609 + -1.4 583,609 + -2.2 583,610 - -1.0 583,610 - -0.9 583,610 - -1.7 583,969 - GFF541 0.72 -0.2 583,969 - GFF541 0.72 +0.8 583,969 - GFF541 0.72 -1.0 583,977 + GFF541 0.74 +0.3 583,977 + GFF541 0.74 -0.5 583,977 + GFF541 0.74 +0.2 584,065 - +0.2 584,116 + -0.2 584,116 + +0.9 584,117 - +0.6 584,194 + +1.2 584,194 + +1.1 584,675 - GFF542 0.25 -0.4 584,675 - GFF542 0.25 -0.4 584,851 + GFF542 0.38 -1.8 584,887 + GFF542 0.40 +0.1 584,887 + GFF542 0.40 -0.6 585,055 + GFF542 0.52 -0.4 585,819 + +0.2 585,820 - -1.5 585,944 - GFF543 0.40 +0.8 586,154 - -0.2 586,234 + +0.3 586,339 + GFF544 0.39 -0.7 586,340 - GFF544 0.40 +0.0 586,477 + GFF544 0.84 -0.0 586,478 - GFF544 0.85 -0.7 586,713 - +1.1 586,713 - -0.9 586,717 - +0.8
Or see this region's nucleotide sequence