Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF540 and GFF541 overlap by 41 nucleotides GFF541 and GFF542 are separated by 242 nucleotides
GFF540 - hypothetical protein, at 582,097 to 583,722
GFF540
GFF541 - hypothetical protein, at 583,682 to 584,080
GFF541
GFF542 - Magnesium transporter MgtE, at 584,323 to 585,729
GFF542
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1 at 582.701 kb on - strand, within GFF540 at 583.069 kb on - strand, within GFF540 at 583.163 kb on - strand, within GFF540 at 583.163 kb on - strand, within GFF540 at 583.245 kb on - strand, within GFF540 at 583.245 kb on - strand, within GFF540 at 583.609 kb on + strand at 583.609 kb on + strand at 583.609 kb on + strand at 583.610 kb on - strand at 583.610 kb on - strand at 583.610 kb on - strand at 583.969 kb on - strand, within GFF541 at 583.969 kb on - strand, within GFF541 at 583.969 kb on - strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 584.065 kb on - strand at 584.116 kb on + strand at 584.116 kb on + strand at 584.117 kb on - strand at 584.194 kb on + strand at 584.194 kb on + strand at 584.675 kb on - strand, within GFF542 at 584.675 kb on - strand, within GFF542 at 584.851 kb on + strand, within GFF542 at 584.887 kb on + strand, within GFF542 at 584.887 kb on + strand, within GFF542 at 585.055 kb on + strand, within GFF542
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 582,701 - GFF540 0.37 -1.7 583,069 - GFF540 0.60 -1.8 583,163 - GFF540 0.66 -1.4 583,163 - GFF540 0.66 -1.3 583,245 - GFF540 0.71 -2.0 583,245 - GFF540 0.71 -2.7 583,609 + -1.2 583,609 + -1.4 583,609 + -2.2 583,610 - -1.0 583,610 - -0.9 583,610 - -1.7 583,969 - GFF541 0.72 -0.2 583,969 - GFF541 0.72 +0.8 583,969 - GFF541 0.72 -1.0 583,977 + GFF541 0.74 +0.3 583,977 + GFF541 0.74 -0.5 583,977 + GFF541 0.74 +0.2 584,065 - +0.2 584,116 + -0.2 584,116 + +0.9 584,117 - +0.6 584,194 + +1.2 584,194 + +1.1 584,675 - GFF542 0.25 -0.4 584,675 - GFF542 0.25 -0.4 584,851 + GFF542 0.38 -1.8 584,887 + GFF542 0.40 +0.1 584,887 + GFF542 0.40 -0.6 585,055 + GFF542 0.52 -0.4
Or see this region's nucleotide sequence