Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF536 and GFF537 are separated by 168 nucleotides GFF537 and GFF538 are separated by 96 nucleotides GFF538 and GFF539 are separated by 251 nucleotides GFF539 and GFF540 are separated by 139 nucleotides
GFF536 - Citrate synthase, at 576,139 to 577,449
GFF536
GFF537 - Molybdenum cofactor guanylyltransferase, at 577,618 to 578,268
GFF537
GFF538 - hypothetical protein, at 578,365 to 581,136
GFF538
GFF539 - hypothetical protein, at 581,388 to 581,957
GFF539
GFF540 - hypothetical protein, at 582,097 to 583,722
GFF540
Position (kb) 578
579
580
581
582 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 577.581 kb on - strand at 577.676 kb on + strand at 577.718 kb on - strand, within GFF537 at 577.872 kb on - strand, within GFF537 at 578.029 kb on + strand, within GFF537 at 578.051 kb on + strand, within GFF537 at 578.051 kb on + strand, within GFF537 at 578.052 kb on - strand, within GFF537 at 578.052 kb on - strand, within GFF537 at 578.052 kb on - strand, within GFF537 at 578.052 kb on - strand, within GFF537 at 578.180 kb on - strand, within GFF537 at 581.251 kb on + strand at 581.252 kb on - strand at 581.271 kb on - strand at 581.389 kb on + strand at 581.389 kb on + strand at 581.467 kb on + strand, within GFF539 at 581.467 kb on + strand, within GFF539 at 581.931 kb on - strand at 582.020 kb on - strand at 582.059 kb on + strand at 582.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 577,581 - +0.2 577,676 + -3.0 577,718 - GFF537 0.15 -3.0 577,872 - GFF537 0.39 -2.7 578,029 + GFF537 0.63 -0.3 578,051 + GFF537 0.67 -0.3 578,051 + GFF537 0.67 -4.0 578,052 - GFF537 0.67 -2.8 578,052 - GFF537 0.67 -2.7 578,052 - GFF537 0.67 -2.5 578,052 - GFF537 0.67 -2.5 578,180 - GFF537 0.86 -2.2 581,251 + -0.9 581,252 - -0.8 581,271 - -0.7 581,389 + -0.7 581,389 + -1.9 581,467 + GFF539 0.14 +1.2 581,467 + GFF539 0.14 -1.1 581,931 - +1.6 582,020 - -1.6 582,059 + +1.5 582,060 - -0.6
Or see this region's nucleotide sequence