Strain Fitness in Xanthobacter sp. DMC5 around GFF529

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF528 and GFF529 are separated by 104 nucleotidesGFF529 and GFF530 are separated by 206 nucleotides GFF528 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 565,919 to 567,088 GFF528 GFF529 - Metalloprotease MmpA, at 567,193 to 568,350 GFF529 GFF530 - Outer membrane protein assembly factor BamA, at 568,557 to 571,055 GFF530 Position (kb) 567 568 569Strain fitness (log2 ratio) -1 0 1at 567.140 kb on + strandat 567.140 kb on + strandat 567.140 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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567,140 + -0.2
567,140 + -1.5
567,140 + +0.1

Or see this region's nucleotide sequence