Strain Fitness in Xanthobacter sp. DMC5 around GFF528

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF526 and GFF527 are separated by 5 nucleotidesGFF527 and GFF528 are separated by 10 nucleotidesGFF528 and GFF529 are separated by 104 nucleotides GFF526 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific), at 564,278 to 565,090 GFF526 GFF527 - Phosphatidate cytidylyltransferase, at 565,096 to 565,908 GFF527 GFF528 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 565,919 to 567,088 GFF528 GFF529 - Metalloprotease MmpA, at 567,193 to 568,350 GFF529 Position (kb) 565 566 567 568Strain fitness (log2 ratio) -1 0 1at 565.906 kb on + strandat 565.906 kb on + strandat 565.906 kb on + strandat 567.140 kb on + strandat 567.140 kb on + strandat 567.140 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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565,906 + +0.6
565,906 + -0.2
565,906 + +0.4
567,140 + -0.2
567,140 + -1.5
567,140 + +0.1

Or see this region's nucleotide sequence