Strain Fitness in Xanthobacter sp. DMC5 around GFF523

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF522 and GFF523 are separated by 123 nucleotidesGFF523 and GFF524 are separated by 23 nucleotides GFF522 - 30S ribosomal protein S2, at 560,560 to 561,480 GFF522 GFF523 - Elongation factor Ts, at 561,604 to 562,527 GFF523 GFF524 - Uridylate kinase, at 562,551 to 563,321 GFF524 Position (kb) 561 562 563Strain fitness (log2 ratio) -1 0 1at 561.184 kb on + strand, within GFF522at 561.184 kb on + strand, within GFF522at 561.323 kb on + strand, within GFF522at 561.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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561,184 + GFF522 0.68 -0.5
561,184 + GFF522 0.68 +0.7
561,323 + GFF522 0.83 +0.1
561,525 + +0.7

Or see this region's nucleotide sequence