Strain Fitness in Xanthobacter sp. DMC5 around GFF50

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF49 and GFF50 are separated by 16 nucleotidesGFF50 and GFF51 overlap by 1 nucleotides GFF49 - hypothetical protein, at 57,483 to 59,549 GFF49 GFF50 - hypothetical protein, at 59,566 to 62,397 GFF50 GFF51 - hypothetical protein, at 62,397 to 63,398 GFF51 GFF52 - hypothetical protein, at 63,395 to 64,396 GFF52 Position (kb) 59 60 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 59.543 kb on - strandat 59.550 kb on - strandat 59.550 kb on - strandat 59.550 kb on - strandat 59.550 kb on - strandat 62.419 kb on + strandat 62.419 kb on + strandat 62.419 kb on + strandat 62.420 kb on - strandat 62.420 kb on - strandat 62.420 kb on - strandat 62.420 kb on - strandat 63.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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59,543 - +0.0
59,550 - -1.1
59,550 - -0.1
59,550 - -2.1
59,550 - -0.8
62,419 + +1.8
62,419 + +0.1
62,419 + -0.1
62,420 - +0.4
62,420 - -0.6
62,420 - -0.1
62,420 - +0.8
63,310 - +1.3

Or see this region's nucleotide sequence