Strain Fitness in Xanthobacter sp. DMC5 around GFF496

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF495 and GFF496 overlap by 4 nucleotidesGFF496 and GFF497 are separated by 94 nucleotidesGFF497 and GFF498 are separated by 14 nucleotides GFF495 - hypothetical protein, at 525,480 to 526,643 GFF495 GFF496 - Long-chain-fatty-acid--CoA ligase, at 526,640 to 528,196 GFF496 GFF497 - hypothetical protein, at 528,291 to 529,043 GFF497 GFF498 - Leu/Ile/Val-binding protein, at 529,058 to 530,218 GFF498 Position (kb) 526 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2at 525.718 kb on + strand, within GFF495at 525.841 kb on + strand, within GFF495at 525.841 kb on + strand, within GFF495at 526.027 kb on + strand, within GFF495at 526.027 kb on + strand, within GFF495at 526.028 kb on - strand, within GFF495at 526.183 kb on + strand, within GFF495at 526.183 kb on + strand, within GFF495at 526.357 kb on + strand, within GFF495at 526.358 kb on - strand, within GFF495at 526.358 kb on - strand, within GFF495at 526.358 kb on - strand, within GFF495at 526.728 kb on + strandat 526.768 kb on + strandat 526.769 kb on - strandat 526.957 kb on - strand, within GFF496at 526.957 kb on - strand, within GFF496at 526.957 kb on - strand, within GFF496at 526.957 kb on - strand, within GFF496at 526.982 kb on + strand, within GFF496at 527.013 kb on + strand, within GFF496at 527.049 kb on + strand, within GFF496at 527.049 kb on + strand, within GFF496at 527.100 kb on + strand, within GFF496at 527.101 kb on - strand, within GFF496at 527.284 kb on + strand, within GFF496at 527.370 kb on + strand, within GFF496at 527.388 kb on + strand, within GFF496at 527.389 kb on - strand, within GFF496at 527.389 kb on - strand, within GFF496at 527.392 kb on - strand, within GFF496at 527.486 kb on - strand, within GFF496at 527.486 kb on - strand, within GFF496at 527.486 kb on - strand, within GFF496at 527.486 kb on - strand, within GFF496at 527.486 kb on - strand, within GFF496at 527.486 kb on - strand, within GFF496at 527.491 kb on - strand, within GFF496at 527.578 kb on - strand, within GFF496at 527.578 kb on - strand, within GFF496at 527.578 kb on - strand, within GFF496at 527.652 kb on + strand, within GFF496at 527.652 kb on + strand, within GFF496at 527.653 kb on - strand, within GFF496at 527.653 kb on - strand, within GFF496at 527.655 kb on + strand, within GFF496at 527.655 kb on + strand, within GFF496at 527.655 kb on + strand, within GFF496at 527.656 kb on - strand, within GFF496at 527.730 kb on + strand, within GFF496at 527.730 kb on + strand, within GFF496at 527.730 kb on + strand, within GFF496at 527.730 kb on + strand, within GFF496at 527.731 kb on - strand, within GFF496at 527.731 kb on - strand, within GFF496at 527.803 kb on - strand, within GFF496at 527.803 kb on - strand, within GFF496at 528.115 kb on + strandat 528.115 kb on + strandat 528.116 kb on - strandat 528.125 kb on + strandat 528.126 kb on + strandat 528.127 kb on - strandat 528.281 kb on + strandat 528.281 kb on + strandat 528.281 kb on + strandat 528.282 kb on - strandat 528.340 kb on + strandat 528.341 kb on - strandat 528.681 kb on + strand, within GFF497at 528.681 kb on + strand, within GFF497at 528.681 kb on + strand, within GFF497at 528.681 kb on + strand, within GFF497at 528.681 kb on + strand, within GFF497at 528.694 kb on - strand, within GFF497at 528.797 kb on + strand, within GFF497at 528.798 kb on - strand, within GFF497at 529.190 kb on - strand, within GFF498

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
525,718 + GFF495 0.20 +0.9
525,841 + GFF495 0.31 -0.6
525,841 + GFF495 0.31 -0.3
526,027 + GFF495 0.47 -0.4
526,027 + GFF495 0.47 +0.1
526,028 - GFF495 0.47 +0.8
526,183 + GFF495 0.60 +0.0
526,183 + GFF495 0.60 +0.3
526,357 + GFF495 0.75 +0.4
526,358 - GFF495 0.75 -0.1
526,358 - GFF495 0.75 -0.5
526,358 - GFF495 0.75 -0.2
526,728 + -0.0
526,768 + +0.3
526,769 - +0.7
526,957 - GFF496 0.20 -0.9
526,957 - GFF496 0.20 -1.9
526,957 - GFF496 0.20 +0.5
526,957 - GFF496 0.20 +1.2
526,982 + GFF496 0.22 -0.5
527,013 + GFF496 0.24 -0.2
527,049 + GFF496 0.26 -1.8
527,049 + GFF496 0.26 +1.0
527,100 + GFF496 0.30 -0.1
527,101 - GFF496 0.30 -0.8
527,284 + GFF496 0.41 -0.6
527,370 + GFF496 0.47 -1.1
527,388 + GFF496 0.48 +0.2
527,389 - GFF496 0.48 +0.2
527,389 - GFF496 0.48 -1.3
527,392 - GFF496 0.48 -0.6
527,486 - GFF496 0.54 +0.4
527,486 - GFF496 0.54 -0.3
527,486 - GFF496 0.54 +0.5
527,486 - GFF496 0.54 +0.9
527,486 - GFF496 0.54 +0.8
527,486 - GFF496 0.54 -0.9
527,491 - GFF496 0.55 +0.2
527,578 - GFF496 0.60 +0.1
527,578 - GFF496 0.60 -0.0
527,578 - GFF496 0.60 -1.9
527,652 + GFF496 0.65 -0.2
527,652 + GFF496 0.65 -0.7
527,653 - GFF496 0.65 +0.3
527,653 - GFF496 0.65 +0.7
527,655 + GFF496 0.65 -2.0
527,655 + GFF496 0.65 +0.6
527,655 + GFF496 0.65 +1.0
527,656 - GFF496 0.65 +1.0
527,730 + GFF496 0.70 +0.1
527,730 + GFF496 0.70 -0.0
527,730 + GFF496 0.70 +0.2
527,730 + GFF496 0.70 -0.0
527,731 - GFF496 0.70 -0.4
527,731 - GFF496 0.70 +1.7
527,803 - GFF496 0.75 -0.7
527,803 - GFF496 0.75 -0.5
528,115 + -0.8
528,115 + -0.6
528,116 - -0.3
528,125 + +0.6
528,126 + -0.5
528,127 - +0.1
528,281 + +0.1
528,281 + -0.3
528,281 + -0.2
528,282 - -0.5
528,340 + +0.9
528,341 - -0.3
528,681 + GFF497 0.52 +0.7
528,681 + GFF497 0.52 +2.2
528,681 + GFF497 0.52 -0.1
528,681 + GFF497 0.52 -0.8
528,681 + GFF497 0.52 +0.1
528,694 - GFF497 0.54 -0.8
528,797 + GFF497 0.67 -0.3
528,798 - GFF497 0.67 -1.5
529,190 - GFF498 0.11 +0.2

Or see this region's nucleotide sequence